Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015942170.1_cds_XP_016485725.1_76627
CDS Infomation

[gene=LOC107806132] [db_xref=GeneID:107806132] [protein=putative U-box domain-containing protein 53] [protein_id=XP_016485725.1] [location=complement(join(69867..69984,70085..70179,70317..70398,71684..71733,71814..71882,71966..72064,72147..72225,72333..72433,72512..72580,72687..72727,72986..73541,74158..74262,74342..74467,74557..74947,76099..76400))] [gbkey=CDS]
Sequence

ATGCACGGTGGAGCTGCCGGCGAAGAATCAAACTCTGATCTTAATCAAATCTTGGTTGAA
AAATTCTACTCACTGGAATCAAGTTATAGGAAACTTGTGGAACAATTCAACGTGTTATAT
CAAGAAAAAAATAAGAATAGTATTGTGAATATGGATTCAGATGAAAAATTAACAGATTTT
TCAGCTGAAATGAGGTTATTGCCTGGAGTTTTCTTTAGTGGGAGTCCGTACAAAAACGTG
TTGAATTGCATGGGTCATGCAGTTCACGTTAGTAGAGCTGATTCTGGGGAAATTATTTAC
TGGAATCGATTTGCTGAAAGACTTTACGGTTATAAAGATCATGAAATACTTGGACAAAGG
TCCACTGAACTGCTTATCTGTGAAGAATATCATGAACTGGCTAGGATTTTCATGGAAAAT
TTGAGCTGTGGAGAATCATGGTCGGGTCTGTTTCCTTTTAAGAAGAGGTCCGGTCAGATT
TTCATGGCAATGGTGACGAAAAGCCCATTGTACGAGGATGACGAGCTTTTTGGTGTTATC
ACTGTTTCGAATGACGCGGCTTCATTTATTAATGTAAACTCCAGAAATGCAAGTATCCAT
GAGGATAATGCTCAACCTGGCGCACGAGGAATAAATTTCAAAAGGATTCAATGGCAGCCA
CGGCTACAAATTGCATCGTCTGTTTCAAATCTGGCTTCAAAAGTTTTCTCACTGAAGCGT
GGAGAGGATACGTGCAATGCATCTGCAGATGCAAGGGACAGAGATCAGGCGGATTTAGAC
GTCAAAGAAGGGAAACCGCTGAAGCCACCCAGAGCACCTGCGACACGGCTGAGTTTCAAT
TTGCTCGGCGGGAAGAATAAAGCTAATGCAGAGAGCTCTCAGAAAGATGAATCTACATTC
GACATTGCTCAGCCTTCCAAAATCGCAGCAAAGGTTATGTCAAAGCTGAACATTGCAGGA
TTTGGGCACCTTGGTAAAGAGAAGGGTCAACACAATGGGGATGACAATACTCGTGTTAGT
GAGGATGTAGCTGAACCATATCCGCCAACAGCTTCAGACGCTAAATCAAATTGTTGTCAC
TTTGGTGATGAATATATTAACCTCCAGAAAAACCAGAAAAGAACTTGTTTTGATCCGGGA
ACAATGTGTGCCCCTACAACTGGGCACGATGTTGTAGAGGGTCCAAGTGGAACCTTCTCA
AGGAACTCCAAGGAATGTCCCGAGGCATCTAAAATTCCTGAGCAGTATCCGGGATCATGT
ATGAATGATGAAGAGCTTAAGCTACAACTCGGGAAATCAAAACTCTCAGAGCTGGAAGAT
TCATCGCAGCAGCTTTTAGAATGCAAGCAATCACCAAAGTCAGGGGGGAGCGTTGACAGC
CGTGGAAGTTCATCAAACATAACTGAGAATGAGTCAAGCTTGATAGTAGATTGTGAAATC
TTATGGGAAGATATTAGCCTAAAGGAGGAAATTGGACGAGGTTCATATGGTGTTGTGTAT
CATGGAATCTGGAACGGATCGGATGTTGCTGTTAAGGTTTTTTTCGGGAATCAATGCTGC
GATGAAACATTGCTCGAGTACAAAAAGGAGATTGAAATAATGAAAAGACTCAGACATCCT
AACGCGTTGCTATTCATGGGGGCCATATTTTCTCAAGAAAAACCTGCTATCGTCACCGAG
TTTTTGCCCAGGGGAAGTCTTTTCAAAGCGCTTCACCGAAATAATAAGCCATTAGACTTC
AGTCGGCGTCTTAGGATGGCCCTCGATGTGGCAAGAGGTATGAATTATTTGCATCGCCGA
AACCCACCTATTGTACATAGAGACCTGAAATCTTCAAATCTGCTTGTCGATAAAAGTTGG
ACCGTCAAGGTTGGAGATTTTGGCCTATCAAGATTTAAAGATGCAACCTTTCTAACATCA
AAATCTGGGCGAGGGACGCCGCAGTGGATGGCTCCTGAAGTACTTCGAAATGAACCTTCA
ACAGAGAAATCTGATGTCTTCAGTTTTGGTGTGATCCTATGGGAATTAATGACTGAATCT
ATACCATGGAGCAACCTTAACTCTTTTCAGGTTGTAGGAGTCGTCGGATTTATGAATCGT
AGATTGGAAATTCCAGAAAATCTTGATACTCGAGTTTCTGCAATCATCCACGATTGTTGG
CAAGGCAATCCAGCAATCCGTCCATCATTTGAAGACATAATTCAAAGGATGACGGACATA
ATTCTCTTGTTTACAGGGTTGACAGCTAGGAAGAAAACGGCCATATTATCAAACATGATT
TGA

Peptide Sequence

PEP ID

XP_016485725.1
PEP Infomation

PREDICTED: putative U-box domain-containing protein 53 [Nicotiana tabacum]
Sequence

MHGGAAGEESNSDLNQILVEKFYSLESSYRKLVEQFNVLYQEKNKNSIVNMDSDEKLTDF
SAEMRLLPGVFFSGSPYKNVLNCMGHAVHVSRADSGEIIYWNRFAERLYGYKDHEILGQR
STELLICEEYHELARIFMENLSCGESWSGLFPFKKRSGQIFMAMVTKSPLYEDDELFGVI
TVSNDAASFINVNSRNASIHEDNAQPGARGINFKRIQWQPRLQIASSVSNLASKVFSLKR
GEDTCNASADARDRDQADLDVKEGKPLKPPRAPATRLSFNLLGGKNKANAESSQKDESTF
DIAQPSKIAAKVMSKLNIAGFGHLGKEKGQHNGDDNTRVSEDVAEPYPPTASDAKSNCCH
FGDEYINLQKNQKRTCFDPGTMCAPTTGHDVVEGPSGTFSRNSKECPEASKIPEQYPGSC
MNDEELKLQLGKSKLSELEDSSQQLLECKQSPKSGGSVDSRGSSSNITENESSLIVDCEI
LWEDISLKEEIGRGSYGVVYHGIWNGSDVAVKVFFGNQCCDETLLEYKKEIEIMKRLRHP
NALLFMGAIFSQEKPAIVTEFLPRGSLFKALHRNNKPLDFSRRLRMALDVARGMNYLHRR
NPPIVHRDLKSSNLLVDKSWTVKVGDFGLSRFKDATFLTSKSGRGTPQWMAPEVLRNEPS
TEKSDVFSFGVILWELMTESIPWSNLNSFQVVGVVGFMNRRLEIPENLDTRVSAIIHDCW
QGNPAIRPSFEDIIQRMTDIILLFTGLTARKKTAILSNMI

Transcript Sequence

Gene sequence data has not been registered.